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Machines and MoleculesAuthor: Machines and Molecules
Machines and Molecules hosts guests on topics from machine learning as well as bio-chemistry/biotech, and therefore bridges the gap between those worlds. The podcast covers three different categories - Knowledge, Solution and Network. Knowledge offers tutorials regarding fundamental concepts within the ML and biochem realm, Solution spotlights companies and startups implementing AI in life sciences or building AI infrastructure, and Network deep dives into investment, politics, and industry networks within this sector. The podcast is hosted by Exazyme, the AI powered protein design platform. Language: en Genres: Natural Sciences, Science Contact email: Get it Feed URL: Get it iTunes ID: Get it |
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Pioneering Molecular Modeling: Victor Guallar’s Insights on Monte Carlo, AI, and Biophysics
Episode 8
Wednesday, 11 December, 2024
Victor Guallar is an ICREA Professor and group leader of the EAPM at the Barcelona Supercomputing Center and Co-Founder of Nostrum Biodiscovery. With a joint PhD from the Autonomous University of Barcelona and UC Berkeley, followed by roles at Columbia University and Washington University, he has built extensive expertise in molecular modeling, enzyme engineering, and drug discovery. At the Barcelona Supercomputing Center, he leads the Atomic and Electronic Protein Modeling group, where his work integrates advanced simulations, machine learning, and quantum mechanics to solve challenges in biophysics and sustainability. Victor’s contributions have resulted in over 120 peer-reviewed publications and recognition through prestigious grants, including the ERC Advanced Grant. In this episode of Machines and Molecules, Victor shares his expertise in leveraging Monte Carlo simulations for protein discovery and optimization. Victor explains the value of simulations in molecular science, detailing how they generate data to predict molecular behavior and improve drug discovery, enzyme engineering, and material science. He contrasts Monte Carlo and molecular dynamics methods, emphasizing their respective strengths and his advancements in creating more efficient simulation tools. Victor also discusses the synergy between simulations and AI, highlighting how combining virtual data with machine learning accelerates innovation and improves accuracy. Drawing from his dual roles in academia and industry, he reflects on the disconnect between academic research and industry needs, advocating for practical applications that make scientific work more impactful. The conversation concludes with insights into the benefits of multidisciplinarity, as Victor shares how diverse interests and experiences have shaped his creativity and career. 00:00 - 01:13 Introduction to Victor Guallar 01:13 - 05:57 Molecular Simulations and Their Applications 05:57 - 10:30 Monte Carlo vs. Molecular Dynamics 10:30 - 13:32 How Simulations Generate Data and Integrate with AI 13:32 - 16:56 Sampling vs. Optimization 16:56 - 20:35 The Role of AI in Molecular Modeling 20:35 - 25:30 Applications of Virtual Data in Drug Discovery & Protein Design 25:30 - 31:00 Victor’s 3rd M Word Category: Knowledge
